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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome … genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … comparable study, where plants were subjected to three nitrogen sources (urea, ammonium, and nitrate) as the sole nitrogen source. We looked at the plant’s response in the …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … their base are microscopic, photosynthetic algae. But human-induced climate change , a new study suggests, is displacing these important cold-water communities of algae with …
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Introducing New Members of the JGI User Executive Committee
… “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here to … JGI efforts aimed at “understanding complex communities and symbioses relevant to the DOI mission.” Additionally, she …
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Ancient Algae Reveal Secrets of Plant Evolution
… land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … P.-M.D is supported by the project Engineering Nitrogen Symbiosis for Africa (ENSA) currently funded … Foreign, Commonwealth and Development Office as Engineering Nitrogen Symbiosis for Africa (OPP1172165), by the …
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Triggering Morel Fruiting
Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut … Compared to the high consumption and acquisition of carbon, nitrogen was not substantially exported from the exogenous … exogenous nutrient source had to borrow some nitrogen from the soil to manufacture catabolic enzymes for …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … hosts release organic carbon. Understanding these complex symbioses between organisms feeds into a better …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in … Restoration on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O … Aerodyne Research Inc.: “Subsurface measurements of nitrogen dynamics in agricultural soil” 4pm Convention …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have … It also plays an important role in soil health through nitrogen-fixation and holds clues for maximizing soybean, … genes related to disease-resistance, flowering time, nitrogen metabolism, seed weight and domestication. Six …
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JGI & KBase at PAG XXVII
XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology … Bioinformatic Approach to Discovering Promoters Regulating Poplar Drought Response 7:27 PM Highlights from Genome of …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The … The Impact Microbes help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding …
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