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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education … Completed VFP applications are due on January 12, 2022. Faculty interested in developing proposals with …
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Data Ecosystem
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … analysis, creation of large metabolite databases by running 1000s of metabolite standards, and development of … untargeted analysis pipelines.  Beyond profiling over 10k samples/year, Dr. Louie and her team work with other JGI …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A centimeter-long bacterium …
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Streamlining Regulon Identification in Bacteria
… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated … addressed in the study were found to control more than 100 genes, one of which was directly characterized by …
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Digging into Microbial Ecosystems Deep Underground
… National Laboratory. Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… technology, engineering and math (STEM) fields. At the 2016 CAMP Statewide Undergraduate Research Symposium , held … the 99 students who attended, representing 9 UC campuses, 10 special merit posters/presenters and 10 honorable …
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Game On: High School Students Drive Everglades Metagenomics Study
… her thoughts about the experience below. In the summer of 2018, Jonathan Benskin was preparing to teach a second year … used to map their routes had been taken. Sifting through 16 Trillion Bases of DNA Taking into consideration some … The class had to sift through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study …
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JGI Portals
… metagenomes, and metatranscriptomes. It features over 15 million viral genomes and fragments, enriched with … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … are due March 1, 2019 for the JGI hackathon, set for May 6-10, 2019, in Walnut Creek, Calif.  Click here and scroll …
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Improving the Cacao Genome and Phytozome
… Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate … That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is … and ensure there will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint … functional links between gene networks. BMC genomics. 20:12. 2019 Anderson et. al., Exploiting algal NADPH oxidase … cell and metabolic differentiation. The Plant Cell . 27: 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome …
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