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Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
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Natural Prodcast Episode 5: Brad Moore
… them that it looked to be of a certain number of modules in size, they then quickly were able to then solve the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice … team on predicting host-virus connections between all viruses in  IMG/VR (Virus) and the GEM catalog, associating 81,000 viruses – …
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Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species
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ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes
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How To Use Our Systems
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iPHoP: A Matchmaker for Phages and their Hosts
… helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find … Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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