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Draft genome of five Cupriavidus plantarum strains: agave, maize and sorghum plant-associated bacteria with resistance to metals
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Multiple Maize Reference Genomes Impact the Identification of Variants by Genome‐Wide Association Study in a Diverse Inbred Panel
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Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
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Micro-Scale Applications Group
… microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly link functional information with individual … Research Team    … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy … Analysis of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient … genome whose evolutionary history and perennial lifecycle makes it important to study directly. The large and complex …
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Functional Characterization of Two Class II Diterpene Synthases Indicates Additional Specialized Diterpenoid Pathways in Maize (Zea mays)
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … sample. Their work showed that single cell genomics can add significant value to the other commonly used … the targeted cells cannot be cultivated in the lab. What makes this particular study unique is the application of …
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Gut Fungi: Unexpected Source of Novel Chemicals
… from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for … the past, natural products have been an important source of antibiotics. Indeed, these anaerobic fungi may be using … for self-defense. But the compounds may also be involved in how the fungi metabolize plant biomass, which could inform …
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JGIota: Sequencing Shiitakes with David Hibbett
… of Clark University fills us in on the kind of decay that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms have evolved.  …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components … to do so is a resource-intensive process. Now, a new study shows how anaerobic fungi — the kind living in the stomachs … landscape of biomass production and bioproduct engineering. Summary That organisms make use of cellulose and …
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Metabolomics Program
… in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and … metabolomics with genomic data to gain insights into how small molecules function within plants, microbes, and … understanding enzymatic transformations, pathways, and how changes in metabolism can affect ecosystem functions. …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions … are well known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of sorghum plants … to determine what genes respond to drought conditions, and how these conditions impact the crop and its microbiome. For …
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