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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first step in the … by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department … B.G.P. was supported by the Marine Biological Laboratory, by the National Science Foundation’s XSEDE computing …
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the … Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and … will be externally peer-reviewed for scientific merit, DOE mission relevance , proposed data usage by the … the applicant.  Learn about the general review process or find details on the internal synthetic biology review …
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide
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JGI Scientists Pen Genome Watch Articles
… Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of … Berkeley National Laboratory, are sharing their expertise in environmental genomics by writing for the column … off the press. She tells prospective authors, “’Once you find a paper that you really like or are passionate about, …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… more about what they learned from working with their JGI mentors, what challenges they overcame, and what new skill sets … the JGI is how to really work in the government lab. And I find this really valuable because in this time that I’ve … : I think this internship affects my future as, um, looking at Sean and Fang when they’re doing their …
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Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed … thrives in desert environments, while the filipes variety is less drought tolerant and is found in river and coastal … several large-scale field experiments and analysis to find relationships between sequence variation and plant …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of … numerous wild Miscanthus lineages to better understand the genetic diversity of the grass, which could help in … This work was supported by the Energy Biosciences Institute … for Advanced Bioenergy and Bioproducts Innovation, which is supported by the U.S. Department of Energy, Office of …
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Webinar: MycoCosm Tutorial
… fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … of the Gene ID etc., which is sometimes not easy to find out) A: If these names are assigned in the process of … fungal conserved genes families of unknown function looking across the entirety of MycoCosm. We’ve taken 18 …
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