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Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  … code for CRISPR systems, which help bacteria resist foreign genetic elements by incorporating short sequences from … , information the Probst lab used to search for and find 13 additional predicted viral  genomes . The team …
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Webinar: MycoCosm Tutorial
… fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … of the Gene ID etc., which is sometimes not easy to find out) A: If these names are assigned in the process of … fungal conserved genes families of unknown function looking across the entirety of MycoCosm. We’ve taken 18 …
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Scaling Up Existing Skill Sets
… in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 … the JGI has really motivated me to think outside of simply looking for jobs/postdocs in industry or academia. It was … was worth it whenever I was able to get a single line of code working and get the desired final output. Being …
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A High‐Throughput Investigation of the Binding Specificity of Carbohydrate‐Binding Modules for Synthetic and Natural Polymers
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Gotta Catch 'Em Gall
… Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into wasps that … and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and nutrient flux, and identify … the IRMS. It’s just a matter of what you’re tuned to be looking for. we haven’t however worked out the ways to do …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science … by NERSC, another user facility at Berkeley Lab. geNomad is now accessible through the National Microbiome Data … and Environmental Research (BER) (89233218CNA000001 to L.A.N.L., DE-AC05-00OR22725 to O.R.N.L., DEAC05-76RL01830 …
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JGI Hosts GPU Hackathon in May
… (JGI), a DOE Office of Science user facility, aims to explore applications in the life sciences that can be ported to the GPU architecture. A GPU hackathon is a five-day coding event that offers participating teams … to either jumpstart acceleration or optimize their code on GPUs. While the  OLCF is organizing nearly a dozen …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … of these four letters represents an organism’s genetic code, or genome, which underlies physical features and … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Awakening the Sleeping Carboxylase Function of Enzymes: Engineering the Natural CO2‑Binding Potential of Reductases
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … of harnessing large datasets, JGI researchers and users are looking for ways of making these experiments more repeatable … these experiments create data aligned with FAIR principles (Findability, Accessibility, Interoperability, and …
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