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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider on  Apple … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … We’ll hear more about CAM and Karolina’s quest in a future episode of our JGI podcast, Genome Insider. I’m Alison Takemura. See you next time. …
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Exometabolomics and MSI: deconstructing how cells interact to transform their small molecule environment
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… I was introduced into what a government lab and what this future could look like. Edward Lu : I think this internship is gonna help me in the future because it just showed me when people have a goal and … bioformatics, so that’s what I’m gonna take with me to the future.  Shari Larsen : I didn’t grow up with computers, and …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … were generated, though the final analyses focused on 598 individuals. Schmutz and his team assembled and annotated …
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Examples: Successful LOIs & Submissions
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Alabama Agricultural & Mechanical University Internship Program
… Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in …
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Entities inside one another ‐ a matryoshka doll in biology?
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Genome-wide characterization of methylguanosine-capped and polyadenylated small RNAs in the rice blast fungus Magnaporthe oryzae
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Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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Special Initiatives & Programs
… science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …
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