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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Repeated migration, interbreeding and bottlenecking shaped the phylogeography of the selfing grass Brachypodium stacei
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved … as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews … enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have an awful lot of crossover, where us … one molecule. But what I would say is where promiscuity is helpful is in an academic lab, for example, where you don’t …
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JGI@25: Using Team Science to Build Communities Around Data
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … OGG on Phytozome  … Fungal Dataset …
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Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal
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Boosting Small Molecule Production in Super “Soup”
… engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due … alternative approaches for manufacturing bioproducts and  biofuels . This first report of their work, supported … Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s … this and deal with it is through these antibiotic- or antifungal-producing bacteria that live on the exoskeleton of … Prodcast, our conversation with Marc Chevrette, a postdoctoral researcher from the laboratory of Jo Handelsman at the …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers … software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread … DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa … focus area was inter-organismal interactions, and two fungal proposals focus on symbiotic relationships. Jessie … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI@25: Strengthening Soybean
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Maximizing … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … Glycine max on Phytozome …
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JGI@25: Roots of a Mutualist Relationship
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal …
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