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Trent Northen
… genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. … of Science (AAAS), 2022&2023 Biosciences Inventor of the Year 2019 R&D100 Award 2016 Berkeley Lab Director …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
On July 30, UC Merced students and their JGI mentors toasted to the … with each intern’s interests or educational goals.  This year’s internship program was remote in its entirety due to … of our work,” said Nigel Mouncey, JGI Director. “This year is unlike any other year, but we’ve had another …
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John Vogel
… served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of … Science, Department of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual …  https://doi.org/10.1111/nph.15662 Gordon, et. al. 2017 Extensive gene content variation in the Brachypodium …
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Mindfully Moving JGI
… sequencing labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three … miles away in another city and county began more than three years ago. For JGIers, the moving process began in 2017 with annual one-day cleanups. During those days, they …
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JGI Scientists Pen Genome Watch Articles
… writing for the Nature Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the … column appears in six issues of the monthly magazine each year.  Until then, the column had been written solely by … their editor. The partnership has proven so successful this year, JGI is providing another three Genome Watch articles. …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a wildfire. The Science After a wildfire burns, … using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, bacteria and viruses … work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed under the …
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Products
Program Product Description Deliverables Cycle Time FY25 Q1  (median/75th percentile*) DNA Synthesis Constructs … change etc) and structural rearrangements, alignment files 384/454 Fungal Transcriptome RNA for expression profiling … sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical …
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JGI@25: From Life at the Extremes to Editing Genomes
… other enzymes in the CRISPR-Cas system. For the past few years they have partnered with JGI’s Microbiome Data Science … for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV … Cas9 with increased lifetime in human plasma. Nat Commun. 2017 Nov 10;8(1):1424. doi: 10.1038/s41467-017-01408-4. …
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Introducing New Members of the JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve … career stages. The election period concluded on December 23, 2021. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
Q:  To what extent is natural soil a limit to identify molecules exchanged between plants and microbiomes during … in the field. By having transcriptomics data across 2 years, as well as a second field trial (which will include a … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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Nikos Kyrpides
University of Crete, Greece … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of … Doctorate from the Aristotle University of Thessaloniki (2017) The van Niel International Prize for Studies in …
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Crysten Blaby-Haas
… and led the Quantitative Plant Science Initiative (2017-2022), a BER Science Focus Area (SFA). In 2022, she … Postdoctoral Award for Research Excellence, 2015 34th Annual Women’s Recognition Award for Science, 2020 NIH … gene expression in green algae. PNAS  118 (7) e2017714118 Foflonker F and Blaby-Haas CE. (2021) Co-locality …
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