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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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JGI@25: Studying Sorghum’s Survival Skills
… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … carbon dioxide and water into sugars and oxygen. Both sugarcane and corn share this photosynthetic pathway. … crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for Sorghum bicolor . Since then, …
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‘Candidatus Adiutrix intracellularis’, an endosymbiont of termite gut flagellates, is the first representative of a deep‐branching clade of Deltaproteobacteria and a putative homoacetogen
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … microbes in the lab,” noted Stephen Nayfach, the study’s first author and research scientist in Nikos Kyrpides’  …
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Better Genome Editing for Bioenergy
Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … “Give me six hours to chop down a tree and I will spend the first four sharpening the axe.” In this study,  published … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …
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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … builds upon several papers and workshops, starting with the first mycorrhizal genome sequence generated by the JGI more …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the … and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Annotation Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … including genomes that are both large and complex. The first publication of a genome generated by the OGG …
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