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Supercharging SIP in the Fungal Hyphosphere
… than DNA lacking isotopes. This manual collection of DNA is time consuming, tedious and potentially error prone, which limits the size and complexity of research … researchers found their updated strategy required one-sixth the labor of the manual process, allowing them to …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers … said virologist Mart Krupovic of the Institut Pasteur, one of the study co-authors and an expert on inoviruses. … phyla across virtually every ecosystem.” By significantly expanding the known diversity of these viruses, genomic …
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DNA Synthesis Program
… and other bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a … in the Design-Build-Test-Learn cycle, helping researchers optimize genetic systems. By enabling these cutting-edge … bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 fixation, redox reactions, and …
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How Filamentous Fungi Sense Food
… decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … break down the wide array of simple and complex components present in plant biomass. This is of interest for … This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published in the  …
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Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle
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Open Frameworks Training the Next Generation of Scientists
… program for higher education that develops skills in fungal biology and genomics.  Myco-Ed :  The Mycological … computational biology analysis. KBase also supports  MICROnet (Microbiomes In Computational Research Opportunities … including agriculture, ecosystem health, and medicine optimization.  Through the Myco-Ed public workforce …
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Doubling Down on Known Protein Families
… novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring … repository of groundbreaking insights, significantly expanding the horizons of potential functions across various … sequences evaded classification. Researchers also tried to hone in on the function of the genes via 3D modeling, and …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… performing activities similar to the specialized animal cells or osteoblasts that make HAp. JGI researchers … using several microscopy techniques to confirm that the cells were producing HAp granules.  The JGI team … this technology might have value in the real world. They estimated that a kilogram of high quality HAp from osteoyeasts …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… threads in the mix. But in the Petri dish, the thin vermicelli-like threads floating delicately above the leaf debris … visible without the assistance of microscope. “It’s 5,000 times bigger than most bacteria. To put it into context, it … Woyke, who also heads the JGI’s Microbial Program and is one of the article’s senior authors. The team was also …
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Small cells with big secrets
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One Complete and Seven Draft Genome Sequences of Subdivision 1 and 3 Acidobacteria Isolated from Soil
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Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project
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