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Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
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Partnerships: Myco-Ed
… Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students … links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, teaching …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to convert sequence into functional assessments. … Biology Lab : a user science group dedicated to user project design, assembly, and quality control Strain … sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods …
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Natural Prodcast Episode 20: Brian Bachmann
… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and … we also worked in DIANs. We worked on that. We had separate projects with John Thorson and Ben Shen. [Listen here to Ben …
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Lytic archaeal viruses infect abundant primary producers in Earth’s crust
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Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
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Opening doors to physical sample tracking and attribution in Earth and environmental sciences
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE …
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Plant Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are … Plant microbiomes hold the amazing ability to influence plant …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading … machine learning to find novel functions that may impact microbiome structure and biogeochemical cycles. He provides … to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded …
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant representatives … – and how the  microbes resist. The battle waged below the Earth’s surface is reconstructed by combining a study of …
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