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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a … Technologies serves as the JGI’s primary point of contact for all High-Throughput Data Generation Platforms …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … v4 at the 2022 VEGA meeting below). Another JGI-developed tool, CheckV, assesses viral genomes, and grades their …
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Sequencing Submission Requirements for DNA Synthesis
… Sequence files for all constructs should be emailed to  Miranda … GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head … 39:499-509. Harrington et al. 2020. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Mol Cell . S1097-2765 …
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery
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Metagenomic reconstructions of bacterial CRISPR loci constrain population histories
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Prokaryote Program User Advisory Committee
… and strategic objectives of the microbial and metagenome programs and report back to them. The Committee is … scientific relevance and quality. The Committee does not perform management functions nor does it direct the Programs' …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the … With respect to documents available from this server, neither the United States Government nor the University of California nor any of their employees, makes any warranty, … by the United States Government or the University of California. The views and opinions of authors expressed herein …
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Optimizing de novo genome assembly from PCR-amplified metagenomes
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Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
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