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A standardized quantitative analysis strategy for stable isotope probing metagenomics
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Phylogenetic and metagenomic analysis of Verrucomicrobia in former  agricultural grassland soil
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… of the innovative research  being proposed by this year’s CSP investigators,” said Tanja Woyke, Deputy Director of … biofuel and bioproducts production, global carbon and nutrient cycling, and biogeochemistry.  You can learn more about this …
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Plant Program
… the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is advancing … It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an app in …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… a  few years ago, researchers can request quantitative SIP analysis as a capability in proposal calls to the U.S. … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host … hundreds of stable isotope probing genome-resolved metagenomes and will be implementing new tools in KBase to …
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Nutrient Inputs Stimulate Mercury Methylation by Syntrophs in a Subarctic Peatland
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Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
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Data Ecosystem
… modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable users to … scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI …
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Game On: High School Students Drive Everglades Metagenomics Study
Jonathan’s email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The class had to sift through over 55 billion … with Texas A&M researchers to assist them with soil sample analysis for nitrogen and carbon concentrations along with …
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Metagenomic stable isotope probing reveals bacteriophage participation in soil carbon cycling
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2024 Progress Report
… in April. It centers our work on four strategic themes: Nutrient Cycling, Functional Diversity, Data and … synthesis and other omics technologies with computational analysis and prediction. Together, and in an integrated … algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our user community …
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