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Natural Prodcast Episode 7: Ben Shen
… penicillin from the fungal species – probably told us that fungi could be very productive sources for, say, biological … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … debris and dead organisms to free up their nutrients; mycorrhizal symbionts shuttle water and nutrients to trees; … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute … Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing … But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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A Plant Root Atlas for Tracking Developmental Trajectories
… the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types in the plant root atlas, and noted that the approach he developed …
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HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
Santa Barbara discuss the importance of studying anaerobic fungi, as well as a recent discovery that turns scientific …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected hurdle: ginormous sex …
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Programs & Platform Leads
… drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forests
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