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Frequently Asked Questions: Project Management
… IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: https://doi.org/10.1093/nar/gkaa939 Fungi: Mycocosm (citation: … are available for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ …
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Project Management Office
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … system to study virus-host interactions. Approximately 150 archaeal viruses had been previously identified. The JGI … they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They looked …
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Natural Prodcast Episode 22: Alison Narayan
… beautiful . It’s like, imagine like a conical tube, like a 50 mil Falcon tube, that visually looks like a piece of …
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How to Submit Sequencing Samples
… Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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New Lineages of Life Group
… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … Conservative taxonomy and quality assessment of giant virus genomes with GVClass. ”  npj Viruses, Volume 2 Article 60. … easy construction of phylogenetic trees from user-provided genomes and phylogenetic markers. …
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Genomics of wood-degrading fungi
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JGI@25: Studying Sorghum’s Survival Skills
… as well. In 2009, the JGI sequenced and analyzed the first reference genome for Sorghum bicolor . Since then, 2,993 … sorghum plants in drought conditions for three years (2016-2018) in the field in Parlier, California at the UC Kearney … this time aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis …
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Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomiae
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Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
… Santa Barbara discuss the importance of studying anaerobic fungi, as well as a recent discovery that turns scientific …
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Webinar: PhycoCosm Tutorial
… data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … for the answer provided by Sara 4.  Q(uestion): Are all CSP produced data automatically assembled and run through … populated by algal genomes thus defined. We also have some reference plant genomes to help with comparative studies of …
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