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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a … to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … Program . The comparative framework provided by these high quality reference genome sequences could help researchers …
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it … it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University … on the global nutrient cycles regulated by their hosts. For example, microbes that capture and store carbon in the …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … v4 at the 2022 VEGA meeting below). Another JGI-developed tool, CheckV, assesses viral genomes, and grades their quality …
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Quality MAGnified
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
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