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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … and viral diversity, leading to a better understanding of microbial communities and ecosystem function.  The … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which …
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum)
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Seasonal Dynamics of Core Fungi in the Switchgrass Phyllosphere, and Co-Occurrence with Leaf Bacteria
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Genomic prediction of switchgrass winter survivorship across diverse lowland populations
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … themselves can also be modified. The best-known example of a modified DNA base is a methylation of the base cytosine … that unlike most flowering plants and animals, fungi lack gene body methylation. The analysis revealed that 5mC in …
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Exploiting members of the BAHD acyltransferase family to synthesize multiple hydroxycinnamate and benzoate conjugates in yeast
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A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains.
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Multiple microbial guilds mediate soil methane cycling along a wetland salinity gradient
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Partnerships: Adopt-A-Genome
… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year …
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