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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi … been published. Spatafora said the work has “significantly advanced our understanding of 1 billion years of evolution …
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Building Wet and Dry Lab Skills
… and training experience funded by a DOE training grant.  Building off the previous year’s project, undergraduate … Hi. My name is Zyiah Mikes. I'm a rising senior majoring in Biology at Alabama A&M. And I'm a summer intern for Sharon … is Tamyra Long. I'm a senior at Alabama A&M majoring in Biology, and I'm also an intern at JGI with Yi and Sharon. …
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Natural Prodcast Episode 22: Alison Narayan
… interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural Products meeting … any association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, … element that needs to be taken into consideration in building these models. And so I think that one of the …
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A most wanted list of conserved microbial protein families with no known domains
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… work to create FAIR datasets to maximize returns on these advances. Over the last two decades, Stable Isotope Probing … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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iPHoP: A Matchmaker for Phages and their Hosts
… more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to … is crucial to understanding what these viruses can do. Building on existing virus-host prediction approaches, … different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data points.  …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… on the Prize – Launching & Sustaining Startups in Synthetic Biology Who’s Invited? All Berkeley Lab Employees and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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Institutional User Agreements
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Products
… and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … Single Particle Sort Draft quality assembly of amplified genomes from sorted cell(s)/particle(s), many unordered … Single Particle Sort Draft quality assembly of amplified genomes from sorted viral particles, unordered contigs …
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Advancing Genome-Resolved Metagenomics beyond the Shotgun
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