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Making a Lichen Together
… their partnership more clearly. The Science The humble lichen is a superorganism: one being that is actually … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … and colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the US Department of Energy (DOE) …
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint appointments as a Deputy Director at … JGI's Deputy of Genomic Technologies. oClick to learn more about the offerings and capabilities we offer JGI users to …
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The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata
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Genomic Identification and Characterization of Saxitoxin Producing Cyanobacteria in Western Lake Erie Harmful Algal Blooms
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This research was sponsored by the U.S. Department of Energy, Office of Science, …
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Global metagenomics reveals plastid diversity and unexplored algal lineages
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team …
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JGI@25: Studying Sorghum’s Survival Skills
… the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … strengths into other plants. A brief timeline of sorghum projects at the JGI: 2009: JGI and collaborators use …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several easy-to-use open source tools …
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The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole
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