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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the … initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max Planck Institute in Hanover, Germany, … I, Pennacchio LA, Rubenstein JL (2013, * corresponding author). A high-resolution enhancer atlas of the developing …
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Better Genome Editing for Bioenergy
CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the endonuclease where to cut, but these …
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Mindfully Moving JGI
… after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a workforce … from 4 single-story buildings to a new 4-story building 20 miles away in another city and county began more than … three years ago. For JGIers, the moving process began in 2017 with annual one-day cleanups. During those days, they …
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Tracking the Origins of Methane-Producing Microbes
… observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with genetic …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… this enzyme family,” said Sang-Woo Han, one of the co-first authors of this work.  Han is an Assistant Professor at … species, each organism has a relatively small set of around 20 ATs. These ATs have maintained a small and relatively …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … a laboratory — and rumen microbes are no exception. Back in 2011, JGI-supported researchers published a paper in the … these environmental samples,” said Matthias Hess, first author on the paper and now an associate professor and head …
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Virocell Necromass Provides Limited Plant Nitrogen and Elicits Rhizosphere Metabolites That Affect Phage Dynamics.
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Graduate Students Get Thesis Research Opportunity at the JGI
… of the latest SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship … microbiomes. Tringe was also Kaze’s mentor during her 2018 internship, in which she explored anthropogenic impacts … the next generation workforce.  Since its inception in 2014, more than 20 UC Merced students have contributed to …
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Trent Northen
Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … and starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., Martin, S., Carrell, A. et al. An …
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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