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Integrating Experimentation with Data
… $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome Institute … featured insightful presentations, dynamic panel discussions, informative poster sessions, thought-provoking … of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing research in bioenergy …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … genomic data to advance microbial research that drives sustainable solutions in energy, agriculture and ecosystem … The Microbial Program focuses on using advanced sequencing technologies to explore …
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Metabolomics Program
… are crucial for advancing the bioeconomy, environmental sustainability, and improving bioenergy crops. … The Metabolomics Program is focused on understanding the critical roles of metabolites in … as they relate to DOE missions in the bioeconomy, sustainability, and environmental research. This program …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes … and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … microbial diversity, work in the Metagenome Program uses several experimental approaches to assess microbial …
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Viral Genomics Group
… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving … of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. … characterization of molecular mechanisms involved in virus:host interaction and host cell take-over by viruses, and …
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A More Intuitive Phytozome Interface
… interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … v13. Below are some answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it … The ability to user query sequences to gene families What about PhytoMine? PhytoMine, the Phytozome implementation of …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley Lab. For … Ford (Operations Area Deputy/Berkeley Lab Deputy Chief Operating Officer). “You define the word ‘collegial’” “Every … is still good. “I noticed right away,” said Ellen Ford about Ray’s personal impact on her, “that you started …
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Microbiome Data Science Team
… into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. … in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts include … genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic … bulk of which belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this … A more recent effort in the Woyke lab is therefore focused on the application of  function-driven single-cell …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive … genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial world but … are built? A: EcoGroups are built based on what is known about the organism’s ecology, mostly based on literature and …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive … trees are incorrect or need to be changed, please contact us and we’ll work work it out 2.  Q(uestion): Do you publish … is not based on a genome model with PhycoCosm, how do we go about getting it in your system? A: I think the best way is …
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Mindfully Moving JGI
… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … home located in the heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved … runs before the end of the week. “One week up and operating is a great story and a testament to our extensive …
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