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Viral Genomics Group
… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving … of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. … 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … also the ability to understand the complicated evolutionary history of strawberry in such detail is biologically … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … diversification and microbial diversity. Learn more about this work and further details on our Genomic …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Recent findings in Ceratopteris richardii show a long history of dynamic evolution and rapid changes in both … well as the evolution of seed plants, the fern’s distant cousin. Ceratopteris richardii, or C-fern, specifically has … undeniable power of plants, and the lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … to succeed. Altiarchaea, like the Hornburg, have a history of countering multiple attempts at virus infections. … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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Tracking the Origins of Methane-Producing Microbes
… the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in … on the global carbon cycle. All methanogenic archaea use one of three pathways for methanogenesis: … us with genetic evidence to tie together the evolutionary history of the different types of methanogenesis occurring …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most … when and how eelgrass adapted and evolved throughout its history. Their research, published in  August 2023 in  …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic … bulk of which belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this … J. F., Hugenholtz P., Woyke T . Minimum information about a single amplified genome (MISAG) and a …
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Microbiome Data Science Team
… into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. … in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts include … Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a … ED: I mean I really think we’re at a unique time in human history, where we’re moving from when my father was born, of …
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JGIota: The Algae Nicknamed ‘Chlamy’
This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii … managed to sequence its genome, and what it has to teach us about other organisms – like plants. [ Editor’s Note: …
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JGI@25: Using Team Science to Build Communities Around Data
Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early diverging fungi, and Francis … National Institute for Agricultural Research (INRAE) focused on in-depth exploration of ecology-related groups of … can learn from evolution that has occurred throughout plant history.”   … 1KFG project on MycoCosm … OGG on Phytozome  … …
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