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… in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal … the most efficient at making proteins likely factors into why fungi have been so evolutionary and ecologically … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …

Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … V, et al. Reproducible growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root …

… in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and colleagues, … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …

Nevada, Las Vegas, and the Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the … Dartmouth University … Metagenomic and single-cell sequence data have provided a means to access novel …

… assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome sequences and annotations are available on JGI’s fungal …

… metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …

Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … …

… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once …

Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … assembly. So while researchers are confident all the DNA sequences came from one cell, including components like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …

… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well … that contribute to a sustainable bioeconomy. Summary The 27 samples studied by researchers came from two … Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic profiles — combined …

… mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me … it’s great to see how far the field has come from the early 2000s. Josue Duque : One of the best parts about interning …

… her thoughts about the experience below. In the summer of 2018, Jonathan Benskin was preparing to teach a second year … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … and Proteobacteria to be the most common phyla of bacteria sequenced from the metagenomic soil samples from the four …