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… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … of Brachypodium distachyon root transporters in plant-microbiome interactions ” Cory-James Pugne-Andenoro : “The best part of …

… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in … expanded genes for proteins requiring zinc. Co-expression analysis as well as laboratory culture experiments showed … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … S. himantioides from Europe, that was sequenced and analyzed by the JGI. The researchers found that S. lacrymans var. … inside homes, and in an environment that offers limited interactions with wild relatives. …

… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … a month and a half later. In September, I went to a centralized computer room, because that was what existed back then, … And as a result, there’s been a lot of work on open pond systems and infrastructure and growing microalgae. And to …

… more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. …

… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the … building high performance user interfaces and backend data systems. Trying to maintain v12’s codebase and legacy data …

… Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … the opportunity to either jumpstart acceleration or optimize their code on GPUs. While the  OLCF is organizing nearly … sure our computational workload can leverage future HPC systems – our data and compute challenges aren’t getting any …

… well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these … across multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater … bioenergy feedstocks, algae are tiny but mighty. An analysis in the 2017 Bioeconomy Report estimated that the …

… researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, … move between organisms. But now, deep sequencing and new analysis methods are bringing this mobilome into light, and …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … to their economies. It also plays an important role in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as a … P. vulgaris on Phytozome …

… and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback before … how KBase (www.kbase.us) can support biological data analysis. It is a free, open source analytics platform …

… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an … fermentative end products of five previously uncharacterized prokaryotes, including two bacteria isolated by their …