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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned … evolved from a white paper approved through JGI’s CSP New Investigator call to a full-scale submission. She aims …
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JGIota: The Algae Nicknamed ‘Chlamy’
… episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC … plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other …
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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … of 328 “high quality” (based on completeness) diverse new virophage genomes containing all four core genes. These …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are being recovered and identified from … The work conducted by the U.S. Department of Energy Joint Genome …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in … genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. …
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High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains
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Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T
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Draft genome sequences of two bacterial type strains isolated from a methanogenic bioreactor: Ruminiclostridium sufflavum DSM 19573T and Anaerosphaera aminiphila DSM 21120T
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public …
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