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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day … intensifies and accelerates drought and desertification across the globe.  Karolina and I kicked off our conversation … If you know Joshua Tree, that’s an example of a yucca species. And the cool thing about yuccas is that there are …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … . Through FICUS, the researchers have tapped into the resources and capabilities of both the JGI and the …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … and involved a lot of different players and researchers across many different labs to be able to sequence a genome.” …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or … a mycobiome culture collection consisting of fungal species from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the … The sequencing project was funded by the U.S. Department of Energy (DOE) Joint …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … Institute (JGI), a DOE Office of Science User Facility. The sequences were then biochemically characterized by a team … delete or add genes in a precise fashion) has applications across many areas. In particular, gene editing is being used …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address … sequencing to understand gene expression: one of the first cross-kingdom spatially-resolved transcriptomics studies to … this work leverages.   These experiments focused on two species at once: the model legume species  Medicago …
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Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates
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Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii
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Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Dunaliella salina Strain CCAP19/18
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Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes
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