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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Extracting the Secrets of Secondary Metabolites
CRAGE-CRISPR combo helps further demystify biosynthetic gene … survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) can then employ CRISPR in a …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the lab. To access the genomes … Science User Facility located at Lawrence Berkeley National Laboratory, is heavily invested in being the bridge to help …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … are important from the standpoint of phage-bacterial coevolution and are also useful tools in CRISPR-Cas … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). And one of the tools that … where transcription factors have been repurposed during evolution to control new functions,” O’Malley said. …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … collected. The team noticed some of the genomes diverged evolutionarily from other previously discovered genomes. … Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a …    While soybean has desirable properties as a liquid transportation fuel, it simply doesn’t yield enough gallons of … the way, it was just like rediscovering genetics, with the evolution of sequencing technologies and the evolution of …
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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … data science, and the development of new informatics tools specifically optimized for high-performance computing … genomes to metagenomes to systems-level modeling and understanding. JGI and KBase are designated DOE Office of …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.       Despite advances in sequencing technologies and computational … diversity. Because most microbes cannot be cultivated under laboratory conditions, their genomes can’t be sequenced …
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