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The Expanding Universe of Methane Metabolisms in Archaea
… of the Institut Pasteur in France, the importance of methanogenesis and the presence of methanogens in nearly all types … well as tools for analysis. “There is evidence that methanogenesis is one of the oldest metabolisms, with the first … its impact on climate along earth history.” Marker genes for diverse methane metabolisms Of the 10 MAGs …
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Finding the Fermenters
… at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism … IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. The final dataset – …
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An Automated Tool for Assessing Virus Data Quality
… perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and … (contigs) of proviruses flanked on one or both sides by genes from the host organism. With the virus-host boundary …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… contains about 6% of the human genome . They discovered genes linked to conditions such as cardiovascular disease, … about 2% of the human genome. They were interested in genes involved in repair of DNA damage, and those associated … 3% of the human genome. They wanted to learn about the genes implicated in the development of breast and prostate …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across …
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Taking Stock of the Known and Unknown Microbial Space
… biodiversity. Using publicly available genome sequence data generated over the past three decades, their study assesses … the estimated diversity of Bacteria and Archaea With phylogenetic diversity standing in as a representative measure of … they used five universally conserved, protein-coding marker genes on nearly 2 million genomes, including isolates, …
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Triggering Morel Fruiting
… decomposition by the black morel, as well as the gene-expression programs encoding the biochemical processes … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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JGI Early Career Researchers Featured in mSystems Special Issue
… genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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JGIota: Looking Back at Methane-Making Microbes
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A Step Toward Controlling Soybean Rust
… genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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JGI announces 2024 New Investigator portfolio
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