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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett … work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and David … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his …
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Work With the JGI! Tips for a Winning CSP Proposal
The JGI’s Community Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and it’s open to scientists at any … stage, anywhere in the world, for free. We accept new projects related to energy and the environment several times …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and … carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal molecular mechanisms can … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in … ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of …
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The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrader
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs … always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of … Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI …
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … clearly have unexpected chemical potential. … This research project was supported by a grant from Santa Barbara Cottage …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Four principles to establish a universal virus taxonomy
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Mateus Fiamenghi
Mateus’s research is focusing on the identification and analysis of Mobile Genetic Elements from …
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