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Nikos Kyrpides
Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters … Research and Analysis ( CAMERA ). … Education … Selected Publications … Awards and Service …
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Expanding Virophage Diversity
… & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able to … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… . Research shows that flagella were lost in other forms of  Chloroflexota that adapted to marine environments … understanding of how these bacteria evolved could help inform engineering microorganisms for biofuel production and … organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint …
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Tanja Woyke Elected to American Academy of Microbiology
… of 2020, selected from 118 nominees. The selection process for AAM Fellows is based on their records of scientific … leaders in the field of microbiology and are relied upon for authoritative advice and insight on critical issues in … One example, published in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from …
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Three Join the JGI User Executive Committee
… and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight other JGI users … she is committed to representing and advocating for early career users on the UEC. As a user of the JGI and … in metagenomics and novel applications for long-read DNA sequencing. As a UEC member, Wilbanks will advocate for …
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Training the Next Generation of Talent
Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate … the first participants in the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship … for building and maintaining cells through the use of deep-sequencing technologies. The internship program was born out …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Viruses Reprogram Cells into Different Virocells
… it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University … on the global nutrient cycles regulated by their hosts. For example, microbes that capture and store carbon in the … in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics and …
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Effects of Polar Light Cycle on Microbial Food Web
… occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates … years ago and has been well-studied by many researchers for nearly five decades. In these frigid systems, where … over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… within their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and … podcast minisode. To date it is the single largest effort to provide a cataloged and curated culture and genome … different areas, beyond the project’s initial scope. Sequencing and culturing this vast collection of rumen …
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … through genetic engineering, inoviruses are used for several biotechnological applications, most notably, … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps … & Microbiomes database to include a dedicated section for viruses, so researchers around the world would have …
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