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The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans
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A metagenomic perspective on the microbial prokaryotic genome census
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Polar Phytoplankton Need Zinc to Cope with the Cold
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom … on microalgal communities across different ocean latitudes from pole to pole, using metatranscriptome and metagenome …
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A Step Toward Controlling Soybean Rust
The United States  is the world’s leading soybean producer , and soybeans are used to … yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by researchers at the … high-quality reference sequence of the complex switchgrass genome. The reference genome built off more than a decade of …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Crysten Blaby-Haas
She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de … user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … Postdoctoral Award for Research Excellence, 2015 34th Annual Women’s Recognition Award for Science, 2020 NIH …
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Yasuo Yoshikuni
… production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating … of citramalate., Metabolic Engineering Communications , 2023 Wu et al. Structural characterization of a soil viral … Discovering untapped biochemistry in microorganisms from hidden corners. Nature Review Microbiology , 2022 …
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Trent Northen
Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. … Couradeau E et al. Probing the active fraction of soil microbiomes using BONCAT-FACS. Nat Commun. 2019 10(1):2770. …
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David Goodstein
… gene models in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative … Plant Comparative Analysis group, and is responsible for genome annotation, comparative analysis and data … in Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference …
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Improving genome assemblies by sequencing PCR products with PacBio
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