Results

Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video … and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr … transcriptome analysis and 8 replicates for metabolomics. Why is this? A:  We did a pilot experiment with the JGI to …
Learn more
Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
Learn more
High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea
Learn more
Complete Genome Sequence of Methanoregula formicica SMSPT, a Mesophilic Hydrogenotrophic Methanogen Isolated from a Methanogenic Upflow Anaerobic Sludge Blanket Reactor
Learn more
Genome Sequence of Victivallis vadensis ATCC BAA-548, an Anaerobic Bacterium from the Phylum Lentisphaerae, Isolated from the Human Gastrointestinal Tract
Learn more
Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin
Learn more
Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
Learn more
Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
Learn more
An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in … based on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both … Foundation (FAPESP). A.P.C. received a scholarship #2018/04240-0 from FAPESP. …
Learn more
How to Target a Microbial Needle within a Community Haystack
… The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … microbes within metagenome samples and associate their sequences with their roles within their environments. …
Learn more
The Surprising Structure of a Shrub Willow Sex Chromosome
… first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their … to the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To engineer them, researchers need to select … located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub willows through the  Community Science …
Learn more
Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et
Learn more