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Cracking the Secrets of the Diatom’s Shell
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Green Algae Reveal One mRNA Encodes Many Proteins
… species of algae and kept seeing what looked like mistakes by the gene prediction algorithms. I decided to dig in a … of Science user facility. The work was partly enabled by the “Facilities Integrating Collaborations for User …
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Boosting Small Molecule Production in Super “Soup”
August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of Texas at Austin and … to “Soup” The work started with yeast strains engineered by Alper’s team to convert the sugar glucose to the products … where they are partnering with Yasuo Yoshikuni and Ian Blaby of the DNA Synthesis Science Program . “This …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… the question, well, how are the microbes being affected by the metals? When metals are introduced, how do they adapt by changing what macromolecules are in their biomass, … stressors, um, alter microbial biomass and then what the consequences are for the ecosystem. ALISON:  So, Ed is trying …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… in California’s manmade water transport canals. Inspired by Randall Munroe’s xkcd comic “Up Goer Five” and his … abstract from a 2019 conference. Both versions appear side-by-side below: Kaze was part of the  2018 cohort of the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to … of plant polyploids. A multi-institutional team led by researchers at Spain’s Universidad de Zaragoza and the … in a Pan-genomic Context For the study, partly enabled by the JGI’s  Community Science Program , the team generated …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, Q&A followed by: 4:15 pm – 5:30 pm: Hosted Hoppy Hour @ Calicraft … Twist Bioscience Sarah Richardson , CEO and Founder, MicroByre (Cyclotron Road company) Hosted by Nigel Mouncey, Director, DOE Joint Genome Institute Read …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British … how they determine identity, as well as the roles played by neighboring cells in these processes.   One of the … viewer that was collaboratively developed for this purpose by the JGI plant comparative genomics data portal  Phytozome …
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Mindfully Moving JGI
… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … (up to 120 sequencing machines at maximum) maintained by a workforce that numbered more than 100 at its peak, all …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… little makers rely on to survive. Now, new research enabled by the U.S. Department of Energy (DOE) Joint Genome … .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a … phylum —  Korarchaeia and  Methanomethylicia   — grow by methanogenesis. Both studies were recently published in  …
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The Expanding Universe of Methane Metabolisms in Archaea
Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome … Facility, for publicly available metagenome data provided by the other study co-authors, and reconstructed from these … conditions, or it could couple the two metabolisms by using sulfite to oxidize methane and hydrogen. McKay …
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