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Characterizing Communities: JGI Announces Latest CSP Portfolio
Nearly 200 Terabases of data are expected to be generated for the accepted proposals, said Susannah Tringe, JGI User … Programs Deputy. “These new CSP projects accelerate our efforts to characterize poorly-studied algal and viral … efforts appear to be redistributing water availability. By sequencing the millet rhizosphere and endosphere communities …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three … on HTP DNA design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic … Award for Research Excellence … Education … Selected Publications … Awards and Honors …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to access high-quality genomic information using minute quantities of DNA derived from … cell. Several years later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led …
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iPHoP: A Matchmaker for Phages and their Hosts
… be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada … ecology. We also know little about where to collect the California Cone Snail  Californiconus californicus (and cone …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… which could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among … reference genome built off more than a decade of work; as sequencing technologies advanced, assembly and annotation of … Phytozome. The combination of field data and genetic information has allowed the research team to associate climate …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… involved? How long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics … up to 50 polar and 150 nonpolar metabolomics analyses. For the other calls, we allow up to 200 polar and up to 500 … The JGI is not a funding organization. Rather, it makes its sequencing, synthesis, metabolomics and data analyses …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome … UC Merced students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … And we’ve been working on isolating and cultivating and sequencing extremophile protists from a hypersaline alkaline …
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