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2025 Progress Report
… demonstrate how their laboratory and data science efforts support users, advance foundational science and enable … Mi Yan, Deanna Beatty)    Vision  Lead AI-driven genomic innovation to advance biotechnology. Mission  As a U.S. … of Science user facility supported by the Biological and Environmental Research program, the Joint Genome Institute …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … focused on stable and accurate computational methods for reacting subsurface flows, and evolved into scalable … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day … to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … that could be applied toward DOE-relevant bioenergy and environmental interests.  Summary As the planet has changed, …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… In this short video, UC Merced undergraduate and graduate … challenges they overcame, and what new skill sets they look forward to taking back to school.  The interns from this … it just showed me when people have a goal and passion for it, it’s possible to do amazing things. And it made me …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… what genes do, how they work, and applying them to environmental and energy challenges. But not all scientists … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo …
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Team Science Reveals Important Protein in Poplar
… Knockout experiments showcase potential for engineering bioenergy crops The Science Scientists at … crops. The trees can be bred to be more resistant to environmental stresses such as nutrient-poor land, drought … of Energy, Office of Science, Office of Biological and Environmental Research, as part of the Quantitative Plant …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from … Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the … on the Spruce and Peatland Responses Under Climatic and Environmental Change (SPRUCE) project Melanie LeGro (2016 …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of … — scientists can better fine-tune their engineering efforts of both plants and root microbiomes to grow energy …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:                 … Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) at their … facilities dedicated to advancing research in bioenergy and environmental science. They provide the scientific community …
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … could lead to the discovery of genes that could be used for multiple biotechnological applications. These …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … regulation is critical to ensuring genes vital for growth and survival across various environments are expressed when their functions are needed. …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team … and scientists builds and operates the data and compute platforms and bioinformatics annotation pipelines that support … X. Metagenomic library and natural product discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 …
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