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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several … intern): Accepted a post-doctoral position with the Plant and Microbe Interaction group at Oak Ridge National …
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Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring
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Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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Tanja Woyke
… Nature Communications, Nature Protocols, Nature Reviews Genetics, ISME J, Nucleic Acids Research, DOE Small Business … et al. 2011. Metagenomic discovery of biomass-degrading genes from cow rumen. Science 331, 463-467. Swan et al. … Awards and Service …
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Trent Northen
… Genome Engineering Enables Rapid Activation of Biosynthetic Gene Clusters. Nat Microbiol. 4(12):2498-2510. doi: …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … Every other group I contacted was happy to offer advice but declined to offer actual scientific help,” said … scientific knowledge, they are also equipping the next generation of scientists that will help shape all of our …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… understanding which microbes are present in a sample, to generate data about which organisms are active, and which … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … Lab). “By offering Stable Isotope Probing as a service at JGI, we're trying to bring in a lot more people who …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Party in the Rhizosphere
… are the VIPs. They’re feasting on the compounds that plants secrete through their roots, creating a lively zone …
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The Expanding Universe of Methane Metabolisms in Archaea
… of the Institut Pasteur in France, the importance of methanogenesis and the presence of methanogens in nearly all types … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available … well as tools for analysis. “There is evidence that methanogenesis is one of the oldest metabolisms, with the first …
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Finding the Fermenters
… of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism … IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M …
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An Automated Tool for Assessing Virus Data Quality
… consortium recommended specific guidelines and best practices for characterizing uncultivated viruses. Following up … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … a community effort to develop guidelines and best practices for defining virus data quality. Summary Characterizing …
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