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… plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the … back in 2014.  Several components of that codebase are no longer supported, and there are now much more powerful and … PhytoMine? PhytoMine, the Phytozome implementation of the InterMine data warehouse, is still available in v13. However, …

… A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers … behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses … DNA, they can affect how microbes cycle nutrients and adapt to climate change. …

… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland … factors shaping the assembly of fungal endophytes across land plants and lichens, mentioned her interest in … eligible for election to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. In …

… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science … Tringe , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science …

… Congratulations to Tanja Woyke, who has been awarded the van Niel … for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in … Woyke as a pioneer in uncovering the hidden diversity of “microbial dark matter”–that uncultured and unknown majority …

… [subhed -- copy to summary above^ as well ] The Science The recipe for … the right ingredients. Researchers collaborating across multiple institutions have sequenced and analyzed the … feedstocks, algae are tiny but mighty. An analysis in the 2017 Bioeconomy Report estimated that the United States has …

… Proposals aim to sequence and annotate genomes from Antarctica to Africa … Their presence reduces the need to add fertilizers to the soil. diCenzo’s proposal is also notable as he had an … he said. “Although in my specific case the projects are different for the two proposals, I can see the New …

… Register here The workshop is addressed to students and professionals of biology, biomedical … fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the … will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …

… chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play an outsize role in cycling carbon and … their essential nutrients, too.  This work is part of a long-term collaboration with the JGI Algal Program, which … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …

… and met local wildlife (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. These lakes are isolated, but varied. They’re a great way to see how climate change affects freshwater ecosystems, and …

… download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only … is to allow scientists to search for specific types of data across organisms, enabling them to conduct more complex … The JGI/Truss team has talked to dozens of researchers to determine what they need and expect from JGI tools. “We’re …

… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The … the evolutionary and functional relationships among the different algae. Scientists can use PhycoCosm’s genome … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …