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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … As well as the seminal Human Genome Project DOE Chromosome publications: The DNA sequence and biology of human …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, … breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. … The JGI …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have … in yeast ( Saccharomyces cerevisiae) to assess the potential of intermediate gene expression on two …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, … Genomics and Computational Biology … Education … Selected Publications … Awards and Honors …
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A Powerful Technique to Study Microbes, Now Easier
Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with … to bring in robots to help process experiments that measure microbial activity in soil. Now, the researchers and robots …
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Extracting the Secrets of Secondary Metabolites
… further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … or activate certain genes and assess how these edits affect functionality.  CRAGE allows for the transplanting of these … into other bacteria, thereby enhancing the scientific community’s understanding of how secondary metabolites are …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics … interactive web-based tools for comparative genomics and community annotation. Presented by Igor Grigoriev, Steven …
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Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
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How Microbes Can Protect Plants in Drier Straits
A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to help …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … recent studies now suggest the gene cluster predates this microbial group. Recently published in the Proceedings of … Following that work, they partnered once more with JGI Microbial Program head Tanja Woyke and her Single Cells team …
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