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Translating macroecological models to predict microbial establishment probability in an agricultural inoculant introduction
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Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana
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Multi-omics reveals nitrogen dynamics associated with soil microbial blooms during snowmelt
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Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … algorithm — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim is part … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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Extracting the Secrets of Secondary Metabolites
… further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due …
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Comparative transcriptomics of CAZy enzymes in white- and brown-rot agaricomycetes: Evolutionary insights into lignocellulose degradation and the relevance of GH16 glycoside hydrolase functional divergence
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, … of XX. But, like some plant and songbird species, the system in shrub willow is flipped: females are … to correct mutations. This process, called gene conversion, helps maintain the integrity of the sequences. The …
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Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation
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Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems
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Serpentinization-Influenced Groundwater Harbors Extremely Low Diversity Microbial Communities Adapted to High pH
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