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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and Elizabeth “Lizzy” … in metagenomics and novel applications for long-read DNA sequencing. As a UEC member, Wilbanks will advocate for …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … available but also complementary single-cell sorting and sequencing of viruses together with their unicellular … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … expressing, the team sequenced their RNA transcripts. All sequencing was done through the JGI Community Science … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … metabolic changes they’ve undergone. The Impact The number of microbes in, on, and around the planet is an astronomical … in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics and …
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … different areas, beyond the project’s initial scope. Sequencing and culturing this vast collection of rumen …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … “We currently have 19 genomes sequenced, 15 that are in sequencing or assembly right now, and eight more that we are …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … conditions and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … called lignocellulose, are the primary components of hardy cell walls. It’s the cellulose and hemicellulose … for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the reference fungal  genome . …
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Supercharging SIP in the Fungal Hyphosphere
The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) … at a larger scale through downstream DNA purification and sequencing steps. Ultimately, researchers found their …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The … through the  Community Science Program , using long-read sequencing to assemble the repetitive areas of the complete …
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