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… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons … efforts with diversity, equity and inclusion in mind. Microbiome ecologist Shade became Director of Research at … aims to help overcome common user bottlenecks in access, analysis and sharing of JGI-generated data. She is also …

… from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. … your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On January … sequence information to BER-funded activities of plant systems that make use of these resources will present on …

… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began colonizing the oceans  … — including the eelgrass genome assembly that enabled analysis of the whole genome duplication event — …

… Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … would be transformative at industrial scales. “Cell-free systems have been really powerful at finding ways to … “But this has been done most commonly in bacterial-based systems, and so one of the things that I think is so special …

… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied and Environmental … — a proof-of-principle for investigating plant-microbe interactions. A final recent advance in CRAGE is the …

… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … spectrometry workflows for polar and nonpolar metabolite analysis, creation of large metabolite databases by running … standards, and development of high-throughput untargeted analysis pipelines.  Beyond profiling over 10k samples/year, …

… help process experiments that measure microbial activity in soil. Now, the researchers and robots have made these …

… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … species and studying diversity in complex biological systems. By making the tools and data available through … evolutionary processes. The team then extended their analysis beyond the reference set, using two additional …

… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … distribution of these viruses in the various ecosystems, their diversity, their predicted metabolic features … study from a JGI-led team uncovered giant viruses in the soil for the first time. The current study applied a …

… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … wasn’t quite accurate, and maybe anaerobic fungi living in soils or the guts of livestock were more capable than … cultivated anaerobic fungi (Neocallimastix californiae) on sorghum, switchgrass and poplar, then monitored changes to …

… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … Genome R&D Group and is one of more than 100 scientists and systems engineers involved in computational work at the JGI. … function (Héctor García Martin of Berkeley Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew …