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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … National Laboratory, used single-cell sequencing to sequence both a cell’s genome and detect accompanying viral …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to … I recently caught up with Karolina at the Plant and Animal Genomes, or PAG conference, when in-person meetings were …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Worldwide Population Genomics Reveal Long-Term Stability of the Mitochondrial Genome Architecture in a Keystone Marine Plant
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Zhong Wang
… new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up genomics analysis to … and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … metagenome and metatranscriptome assembly, Hadoop based on sequence analysis framework, etc. For example, this group …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … Université des Antilles, described the morphological and genomic features of this giant filamentous bacterium, along … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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SpaRC: scalable sequence clustering using Apache Spark
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