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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina … lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put …
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Tanja Woyke
… Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont … which she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position … 2018-2023 Highly Cited Researcher, Biology and Biochemistry, …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … tracked the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics …
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JGI at the AGU Fall Meeting
… User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno Kasak, … context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST … Malak Tfaily, University of Arizona: “Spatial metabolic profiling in roots reveals plant specific responses to …
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Promoting the Power of Viral Metagenomics
… Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront … Currently one of the best ways to study such viruses is by sequencing the bulk DNA or RNA contained in a sample that … and discuss some of the current challenges faced by those using metagenomics to try to understand the far-reaching …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to …
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A Step Toward Controlling Soybean Rust
… yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien … Institute for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Georg Rath
… leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the … of the Cluster Advisory Group (CAG), he sees his role as using the substrate provided by LBNL, where possible, and … of representatives from JGI’s science and production sequencing programs. …
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Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Evolutionary Analyses of Gene Expression Divergence in Panicum hallii: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants
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Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach
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