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JGI Welcomes New UEC Members
Learn more
Identifying the Microbial Cleanup Crew at a Superfund Site
… down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other …
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How Filamentous Fungi Sense Food
… a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty … to mention Allen wrenches. The fungi are similarly armed with a variety of PCWDEs to first break down the components … and optimized by Ronan O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… are bacteria that act like tiny natural engineers with special skills to break down pollutants and recycle … study published in  The ISME Journal     focused on a class within  Chloroflexota called  Dehalococcoidia . Some  … organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint …
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers … been  published in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to … sugarcane was published as a step forward in this effort. Sequencing and assembling the genome required a custom …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… of quantity and thickness. Replacing older, thicker ice with younger, thinner ice means more fresh water — and less salt — near the surface where algae grow. Armed with a better understanding of the alga’s stress resistance … This was facilitated in part by RNA library preparation and sequencing from the U.S. Department of Energy (DOE) Joint …
Learn more
Tanja Woyke Elected to American Academy of Microbiology
One example, published in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from … the boundaries of energy and environmental genomics.” Along with Woyke, two JGI users were also elected to the AAM: … (VEGA) Symposium which is being held in conjunction with the DOE Joint Genome Institute’s 15th Annual Genomics …
Learn more
Three Join the JGI User Executive Committee
… lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological … in crops. He has been a PI or Co-PI on five user projects with the JGI, as well as served on review panels for the JGI … in metagenomics and novel applications for long-read DNA sequencing. As a UEC member, Wilbanks will advocate for …
Learn more
Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … expressing, the team sequenced their RNA transcripts. All sequencing was done through the JGI Community Science … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Viruses Reprogram Cells into Different Virocells
… outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive the energy … part of efforts to characterize global microbial diversity with an aim to improve predictive ecosystems models, … in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics and …
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JGI@25: Using Team Science to Build Communities Around Data
… together over 400 proposal collaborators and co-authors with affiliations at over 180 organizations in 29 U.S. … 85 proposal collaborators, 58 had never shared a proposal with each other prior to their involvement with the 1KFG … “We currently have 19 genomes sequenced, 15 that are in sequencing or assembly right now, and eight more that we are …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine … catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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