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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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iPHoP: A Matchmaker for Phages and their Hosts
With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … it predicted many more likely hosts for viruses in human microbiome samples, reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, such as terrestrial …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 … partnership had become a “model” of sorts at the Lab. “This project represents part of our long term efforts to … all the work that went into this program was the feedback from the graduate student interns; “it changed what I want …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main … lignin.  Researchers led by Michelle O’Malley’s lab at the University of California at Santa Barbara  recently … (GLBRC, https://www.glbrc.org/) contract DE-SC0018409 (University of Wisconsin and Michigan State University). The …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … began in 2014, pairs undergraduate and graduate students from UC Merced with at least one JGI mentor. Together, they work through a specific project that aligns with each intern’s interests or …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
O’Malley, a chemical and biological engineer at the University of California Santa Barbara. So plants don’t … into biochemical production.    Over time, as these projects have delivered results, they have also snowballed … it’s possible that fungal communities — or enzymes from fungal communities — could pave the way for many …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … The technology expresses the transcription factor proteins from a DNA template amplified directly from either genomic … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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JGI & KBase at PAG XXVII
January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE … science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you … your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On January …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change … impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … The Blob reached southern California. Steven Hallam of the University of British Columbia was already collecting ocean …
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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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