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Hiroshi Otani
… family transcriptional regulator, is modulated through a novel mechanism. Nucleic Acids Res. 44, 595-607. Otani, H., …
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Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa.
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How to Target a Microbial Needle within a Community Haystack
… the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … the HCR-FISH+FACS targeted pipeline on North Sea metagenomes as a proof of principle, the team used a …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by researchers at the … switchgrass has become an important species whose complex genomes are helping breeders understand how they can boost …
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David Goodstein
… of interest and gene copy number variation across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant …
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Nick Everson
… departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics … and acts on behalf of the JGI Director in day-to-day management and planning related to the JGI’s infrastructure and … and UC policies and procedures that have an impact on management of the JGI.  In addition, he makes decisions or final …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … genome sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… all the work that went into this program was the feedback from the graduate student interns; “it changed what I want … interns. For him, it was a special moment to see interns go from being “intimidated and nervous” at the beginning of the … perspectives and views” helped her further develop management and supporting skills for the students. Being able to …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… multiple avenues, including agriculture, climate modeling, novel bioproducts, and environmental remediation—all … planning workshops, as well as collecting extensive input from all JGI staff, Biosciences and Berkeley Lab leadership, … the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and …
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Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium
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Getting to the Root of Plant‐Mediated Methane Emissions and Oxidation in a Thermokarst Bog
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Kjiersten Fagnan
… data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on … presented work related to distributed data and workflow management. Dr. Fagnan is also a co-PI for the National …
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