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High-density CRISPRi screens reveal diverse routes to improved acclimation in cyanobacteria.
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Simon Roux
… development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for … al., 2021. Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria …
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Crystal structure of the FRP and identification of the active site for modulation of OCP-mediated photoprotection in cyanobacteria
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A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria
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Large‐scale maps of variable infection efficiencies in aquatic Bacteroidetes phage‐host model systems
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  … tetraploid, with four sets of chromosomes; the study showed that these sets descend from two now-extinct progenitors. …
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Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … tetraploid, with four sets of chromosomes; the study showed that these sets descend from two now-extinct progenitors. …
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Secondary Metabolites Program
… to facilitate the discovery of new bio-based molecules that can drive innovations in bioenergy, sustainable … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … of horizontal gene transfer. … The SMC provides complete sequence and annotation data for secondary metabolite …
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Extensive Turnover of Compatible Solutes in Cyanobacteria Revealed by Deuterium Oxide (D2O) Stable Isotope Probing
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of …
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