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JGI@25: Using Team Science to Build Communities Around Data
Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … to their involvement with the 1KFG project. Over 1,000 species have been nominated for the project by more than 100 … issue of Nature Plants . C-fern has a genome approximately three times the size of the human genome. There are four …
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Picking Up Threads of Cotton Genomics
Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is … species. Unique genes were also identified in the other three wild species. “We thought, ‘In all of these wild …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … ecotypes because, historically, they have used the sequence of a “marker gene,” namely the 16S ribosomal RNA …
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Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes
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At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions
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Microbial community analysis of three hydrocarbon reservoir cores provides valuable insights for the assessment of reservoir souring potential
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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… hills and valleys, on a smaller scale. Depending on the species, some sphagnum may prefer the dryer, more elevated … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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JGIota: Looking Back at Sequencing for Soybeans
So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples … at these gardens. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs)—the  Great Lakes … many parts of the country also helped the team understand why some switchgrass plants from the Northeast have traits …
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Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation
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