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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of …
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize fields. … So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome …
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Natural Prodcast Episode 17: Cassandra Quave
Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is …
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JGIota: The Algae Nicknamed ‘Chlamy’
UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other … in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58
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Harnessing symbiotic bacteria for disease control
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings … industry, and government organizations for three days of scientific presentation, interactive panel discussions, …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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